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Overview

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Punchlist for: Salsa Hi-C Joins

scaffold_1

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_1	1	1	198433083	W	scaffold_1_arrow	na	+
scaffold_1	2	198433084	198433583	gap	500	na	+
scaffold_1	3	198433584	236595063	W	scaffold_28_arrow	na	-

scaffold_2

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_2	1	1	13833566	W	scaffold_32_arrow	na	-
scaffold_2	2	13833567	13834066	gap	500	na	+
scaffold_2	3	13834067	117439614	W	scaffold_12_arrow	na	+
scaffold_2	4	117439615	117440114	gap	500	na	+
scaffold_2	5	117440115	216717657	W	scaffold_13_arrow	na	-

scaffold_3

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_3	1	1	104648409	W	scaffold_11_arrow	na	-
scaffold_3	2	104648410	104648909	gap	500	na	+
scaffold_3	3	104648910	195451225	W	scaffold_15_arrow	na	-

scaffold_5

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_5	1	1	130687534	W	scaffold_5_arrow	na	+
scaffold_5	2	130687535	130688034	gap	500	na	+
scaffold_5	3	130688035	177538832	W	scaffold_24_arrow	na	+

scaffold_6

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_6	1	1	110613705	W	scaffold_9_arrow	na	-
scaffold_6	2	110613706	110614205	gap	500	na	+
scaffold_6	3	110614206	169301313	W	scaffold_22_arrow	na	-

scaffold_7

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_7	1	1	140891648	W	scaffold_4_arrow	na	-
scaffold_7	2	140891649	140892148	gap	500	na	+
scaffold_7	3	140892149	153851279	W	scaffold_33_arrow	na	-

scaffold_9

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_9	1	1	43691638	W	scaffold_26_arrow	na	+
scaffold_9	2	43691639	43692138	gap	500	na	+
scaffold_9	3	43692139	83593244	W	scaffold_27_arrow	na	+
scaffold_9	4	83593245	83593744	gap	500	na	+
scaffold_9	5	83593745	142951582	W	scaffold_21_arrow	na	+

scaffold_19

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_19	1	1	44324586	W	scaffold_25_arrow	na	+
scaffold_19	2	44324587	44325086	gap	500	na	+
scaffold_19	3	44325087	72080930	W	scaffold_31_arrow	na	+

scaffold_24

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_24	1	1	450434	W	scaffold_89_arrow	na	-
scaffold_24	2	450435	450934	gap	500	na	+
scaffold_24	3	450935	1831106	W	scaffold_50_arrow	na	+
scaffold_24	4	1831107	1831606	gap	500	na	+
scaffold_24	5	1831607	4887560	W	scaffold_38_arrow	na	+
scaffold_24	6	4887561	4888060	gap	500	na	+
scaffold_24	7	4888061	8012878	W	scaffold_37_arrow	na	+
scaffold_24	8	8012879	8013378	gap	500	na	+
scaffold_24	9	8013379	8312889	W	scaffold_112_arrow	na	-
scaffold_24	10	8312890	8313389	gap	500	na	+
scaffold_24	11	8313390	8554842	W	scaffold_132_arrow	na	-

scaffold_25

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_25	1	1	4438872	W	scaffold_35_arrow	na	+
scaffold_25	2	4438873	4439372	gap	500	na	+
scaffold_25	3	4439373	5249073	W	scaffold_62_arrow	na	+

scaffold_28

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_28	1	1	1172181	W	scaffold_51_arrow	na	-
scaffold_28	2	1172182	1172681	gap	500	na	+
scaffold_28	3	1172682	2954023	W	scaffold_42_arrow	na	+

scaffold_29

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_29	1	1	1036634	W	scaffold_55_arrow	na	+
scaffold_29	2	1036635	1037134	gap	500	na	+
scaffold_29	3	1037135	2499526	W	scaffold_48_arrow	na	+

scaffold_31

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_31	1	1	618842	W	scaffold_72_arrow	na	+
scaffold_31	2	618843	619342	gap	500	na	+
scaffold_31	3	619343	2002706	W	scaffold_49_arrow	na	+

scaffold_34

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_34	1	1	537419	W	scaffold_80_arrow	na	+
scaffold_34	2	537420	537919	gap	500	na	+
scaffold_34	3	537920	1800597	W	scaffold_52_arrow	na	-

scaffold_35

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_35	1	1	203745	W	scaffold_152_arrow	na	-
scaffold_35	2	203746	204245	gap	500	na	+
scaffold_35	3	204246	1679937	W	scaffold_47_arrow	na	-
scaffold_35	4	1679938	1680437	gap	500	na	+
scaffold_35	5	1680438	1739701	W	scaffold_631_arrow	na	+

scaffold_36

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_36	1	1	76858	W	scaffold_442_arrow	na	+
scaffold_36	2	76859	77358	gap	500	na	+
scaffold_36	3	77359	1693201	W	scaffold_43_arrow	na	+

scaffold_40

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_40	1	1	111988	W	scaffold_265_arrow	na	-
scaffold_40	2	111989	112488	gap	500	na	+
scaffold_40	3	112489	268593	W	scaffold_194_arrow	na	-
scaffold_40	4	268594	269093	gap	500	na	+
scaffold_40	5	269094	875775	W	scaffold_73_arrow	na	-
scaffold_40	6	875776	876275	gap	500	na	+
scaffold_40	7	876276	1451889	W	scaffold_76_arrow	na	-

scaffold_41

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_41	1	1	74898	W	scaffold_460_arrow	na	-
scaffold_41	2	74899	75398	gap	500	na	+
scaffold_41	3	75399	430623	W	scaffold_79_arrow	na	+
scaffold_41	4	430624	431123	gap	500	na	+
scaffold_41	5	431124	1215675	W	scaffold_53_arrow	na	+

scaffold_43

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_43	1	1	366243	W	scaffold_103_arrow	na	-
scaffold_43	2	366244	366743	gap	500	na	+
scaffold_43	3	366744	1093612	W	scaffold_59_arrow	na	-

scaffold_44

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_44	1	1	706918	W	scaffold_67_arrow	na	-
scaffold_44	2	706919	707418	gap	500	na	+
scaffold_44	3	707419	1020663	W	scaffold_110_arrow	na	-
scaffold_44	4	1020664	1021163	gap	500	na	+
scaffold_44	5	1021164	1063115	W	scaffold_1012_arrow	na	+

scaffold_47

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_47	1	1	654773	W	scaffold_64_arrow	na	+
scaffold_47	2	654774	655273	gap	500	na	+
scaffold_47	3	655274	935623	W	scaffold_95_arrow	na	-

scaffold_48

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_48	1	1	655079	W	scaffold_69_arrow	na	+
scaffold_48	2	655080	655579	gap	500	na	+
scaffold_48	3	655580	896827	W	scaffold_133_arrow	na	-
scaffold_48	4	896828	897327	gap	500	na	+
scaffold_48	5	897328	929014	W	scaffold_1245_arrow	na	+

scaffold_49

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_49	1	1	95892	W	scaffold_317_arrow	na	-
scaffold_49	2	95893	96392	gap	500	na	+
scaffold_49	3	96393	912612	W	scaffold_61_arrow	na	+

scaffold_51

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_51	1	1	124477	W	scaffold_238_arrow	na	+
scaffold_51	2	124478	124977	gap	500	na	+
scaffold_51	3	124978	848764	W	scaffold_66_arrow	na	+

scaffold_52

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_52	1	1	134131	W	scaffold_221_arrow	na	+
scaffold_52	2	134132	134631	gap	500	na	+
scaffold_52	3	134632	386666	W	scaffold_99_arrow	na	-
scaffold_52	4	386667	387166	gap	500	na	+
scaffold_52	5	387167	842302	W	scaffold_86_arrow	na	+

scaffold_56

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_56	1	1	85705	W	scaffold_378_arrow	na	-
scaffold_56	2	85706	86205	gap	500	na	+
scaffold_56	3	86206	746621	W	scaffold_68_arrow	na	+

scaffold_57

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_57	1	1	95669	W	scaffold_319_arrow	na	+
scaffold_57	2	95670	96169	gap	500	na	+
scaffold_57	3	96170	683150	W	scaffold_75_arrow	na	+

scaffold_59

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_59	1	1	111127	W	scaffold_266_arrow	na	+
scaffold_59	2	111128	111627	gap	500	na	+
scaffold_59	3	111628	623121	W	scaffold_83_arrow	na	-

scaffold_60

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_60	1	1	545644	W	scaffold_78_arrow	na	-
scaffold_60	2	545645	546144	gap	500	na	+
scaffold_60	3	546145	594881	W	scaffold_870_arrow	na	+

scaffold_61

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_61	1	1	278308	W	scaffold_119_arrow	na	-
scaffold_61	2	278309	278808	gap	500	na	+
scaffold_61	3	278809	521748	W	scaffold_131_arrow	na	-
scaffold_61	4	521749	522248	gap	500	na	+
scaffold_61	5	522249	592922	W	scaffold_491_arrow	na	-

scaffold_63

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_63	1	1	51488	W	scaffold_799_arrow	na	+
scaffold_63	2	51489	51988	gap	500	na	+
scaffold_63	3	51989	236107	W	scaffold_163_arrow	na	+
scaffold_63	4	236108	236607	gap	500	na	+
scaffold_63	5	236608	557180	W	scaffold_108_arrow	na	+

scaffold_64

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_64	1	1	523222	W	scaffold_82_arrow	na	-
scaffold_64	2	523223	523722	gap	500	na	+
scaffold_64	3	523723	555364	W	scaffold_1243_arrow	na	+

scaffold_67

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_67	1	1	98361	W	scaffold_307_arrow	na	+
scaffold_67	2	98362	98861	gap	500	na	+
scaffold_67	3	98862	322250	W	scaffold_140_arrow	na	+
scaffold_67	4	322251	322750	gap	500	na	+
scaffold_67	5	322751	530542	W	scaffold_151_arrow	na	+

scaffold_68

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_68	1	1	454520	W	scaffold_88_arrow	na	-
scaffold_68	2	454521	455020	gap	500	na	+
scaffold_68	3	455021	527447	W	scaffold_476_arrow	na	+

scaffold_73

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_73	1	1	58386	W	scaffold_655_arrow	na	+
scaffold_73	2	58387	58886	gap	500	na	+
scaffold_73	3	58887	449557	W	scaffold_98_arrow	na	+

scaffold_81

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_81	1	1	334564	W	scaffold_106_arrow	na	+
scaffold_81	2	334565	335064	gap	500	na	+
scaffold_81	3	335065	377282	W	scaffold_1003_arrow	na	-

scaffold_85

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_85	1	1	313325	W	scaffold_109_arrow	na	+
scaffold_85	2	313326	313825	gap	500	na	+
scaffold_85	3	313826	366008	W	scaffold_787_arrow	na	-

scaffold_86

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_86	1	1	145033	W	scaffold_210_arrow	na	-
scaffold_86	2	145034	145533	gap	500	na	+
scaffold_86	3	145534	364437	W	scaffold_111_arrow	na	-

scaffold_87

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_87	1	1	66968	W	scaffold_536_arrow	na	-
scaffold_87	2	66969	67468	gap	500	na	+
scaffold_87	3	67469	354147	W	scaffold_118_arrow	na	+

scaffold_90

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_90	1	1	216071	W	scaffold_143_arrow	na	-
scaffold_90	2	216072	216571	gap	500	na	+
scaffold_90	3	216572	334574	W	scaffold_257_arrow	na	+

scaffold_92

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_92	1	1	134353	W	scaffold_223_arrow	na	-
scaffold_92	2	134354	134853	gap	500	na	+
scaffold_92	3	134854	315393	W	scaffold_167_arrow	na	-

scaffold_93

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_93	1	1	55113	W	scaffold_727_arrow	na	+
scaffold_93	2	55114	55613	gap	500	na	+
scaffold_93	3	55614	270943	W	scaffold_145_arrow	na	-
scaffold_93	4	270944	271443	gap	500	na	+
scaffold_93	5	271444	308884	W	scaffold_1119_arrow	na	-

scaffold_95

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_95	1	1	97078	W	scaffold_312_arrow	na	-
scaffold_95	2	97079	97578	gap	500	na	+
scaffold_95	3	97579	214608	W	scaffold_258_arrow	na	+
scaffold_95	4	214609	215108	gap	500	na	+
scaffold_95	5	215109	297694	W	scaffold_394_arrow	na	+

scaffold_100

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_100	1	1	149912	W	scaffold_204_arrow	na	-
scaffold_100	2	149913	150412	gap	500	na	+
scaffold_100	3	150413	282648	W	scaffold_226_arrow	na	-

scaffold_105

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_105	1	1	77287	W	scaffold_431_arrow	na	+
scaffold_105	2	77288	77787	gap	500	na	+
scaffold_105	3	77788	265268	W	scaffold_158_arrow	na	-

scaffold_108

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_108	1	1	138999	W	scaffold_217_arrow	na	-
scaffold_108	2	139000	139499	gap	500	na	+
scaffold_108	3	139500	258412	W	scaffold_251_arrow	na	+

scaffold_112

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_112	1	1	194572	W	scaffold_156_arrow	na	+
scaffold_112	2	194573	195072	gap	500	na	+
scaffold_112	3	195073	246472	W	scaffold_807_arrow	na	-

scaffold_114

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_114	1	1	217640	W	scaffold_141_arrow	na	-
scaffold_114	2	217641	218140	gap	500	na	+
scaffold_114	3	218141	243201	W	scaffold_1365_arrow	na	-

scaffold_118

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_118	1	1	197113	W	scaffold_154_arrow	na	-
scaffold_118	2	197114	197613	gap	500	na	+
scaffold_118	3	197614	232949	W	scaffold_1178_arrow	na	+

scaffold_119

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_119	1	1	49356	W	scaffold_857_arrow	na	+
scaffold_119	2	49357	49856	gap	500	na	+
scaffold_119	3	49857	231201	W	scaffold_165_arrow	na	-

scaffold_122

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_122	1	1	73160	W	scaffold_465_arrow	na	-
scaffold_122	2	73161	73660	gap	500	na	+
scaffold_122	3	73661	227017	W	scaffold_197_arrow	na	+

scaffold_125

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_125	1	1	167385	W	scaffold_179_arrow	na	+
scaffold_125	2	167386	167885	gap	500	na	+
scaffold_125	3	167886	222899	W	scaffold_730_arrow	na	-

scaffold_126

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_126	1	1	44309	W	scaffold_950_arrow	na	+
scaffold_126	2	44310	44809	gap	500	na	+
scaffold_126	3	44810	221233	W	scaffold_170_arrow	na	+

scaffold_127

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_127	1	1	84101	W	scaffold_384_arrow	na	+
scaffold_127	2	84102	84601	gap	500	na	+
scaffold_127	3	84602	173082	W	scaffold_357_arrow	na	-
scaffold_127	4	173083	173582	gap	500	na	+
scaffold_127	5	173583	218201	W	scaffold_945_arrow	na	+

scaffold_144

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_144	1	1	127992	W	scaffold_233_arrow	na	+
scaffold_144	2	127993	128492	gap	500	na	+
scaffold_144	3	128493	179906	W	scaffold_805_arrow	na	+

scaffold_147

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_147	1	1	51409	W	scaffold_806_arrow	na	-
scaffold_147	2	51410	51909	gap	500	na	+
scaffold_147	3	51910	178304	W	scaffold_236_arrow	na	-

scaffold_153

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_153	1	1	108714	W	scaffold_275_arrow	na	+
scaffold_153	2	108715	109214	gap	500	na	+
scaffold_153	3	109215	168116	W	scaffold_639_arrow	na	-

scaffold_155

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_155	1	1	56781	W	scaffold_687_arrow	na	+
scaffold_155	2	56782	57281	gap	500	na	+
scaffold_155	3	57282	135533	W	scaffold_430_arrow	na	-
scaffold_155	4	135534	136033	gap	500	na	+
scaffold_155	5	136034	168477	W	scaffold_1229_arrow	na	+

scaffold_221

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_221	1	1	33256	W	scaffold_1212_arrow	na	-
scaffold_221	2	33257	33756	gap	500	na	+
scaffold_221	3	33757	118424	W	scaffold_380_arrow	na	-

scaffold_239

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_239	1	1	48582	W	scaffold_873_arrow	na	-
scaffold_239	2	48583	49082	gap	500	na	+
scaffold_239	3	49083	109471	W	scaffold_609_arrow	na	-

scaffold_254

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_254	1	1	83593	W	scaffold_385_arrow	na	-
scaffold_254	2	83594	84093	gap	500	na	+
scaffold_254	3	84094	103594	W	scaffold_1436_arrow	na	+

scaffold_273

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_273	1	1	59382	W	scaffold_629_arrow	na	-
scaffold_273	2	59383	59882	gap	500	na	+
scaffold_273	3	59883	97857	W	scaffold_1103_arrow	na	-

scaffold_277

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_277	1	1	37467	W	scaffold_1118_arrow	na	-
scaffold_277	2	37468	37967	gap	500	na	+
scaffold_277	3	37968	96879	W	scaffold_638_arrow	na	+

scaffold_378

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_378	1	1	43046	W	scaffold_984_arrow	na	-
scaffold_378	2	43047	43546	gap	500	na	+
scaffold_378	3	43547	79346	W	scaffold_1167_arrow	na	-

scaffold_713

Super-Scaffold	objID	Start	End	Component Type	Component Name	Component IndexKey	Component Orientation
scaffold_713	1	1	23159	W	scaffold_1396_arrow	na	-
scaffold_713	2	23160	23659	gap	500	na	+
scaffold_713	3	23660	53199	W	scaffold_1297_arrow	na	+

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