Pig (USMARCv1) Assembly Information

Assembly

There is currently no description regarding the Pig_USMARCv1 assembly

General Information
BioProjectPRJNA392765
BioSampleSAMN07325927
SubmitterUSDA_ARS
Date2017-12-20
Sample Sexmale
Assembly Typehaploid
Assembly LevelChromosome
WGS ProjectNPJO01
Assembly MethodCelera_Assembler_v._8.3rc2
Genome Coverage65.0x
Sequencing TechPacBio;_Illumina_NextSeq_500
Assembly AccessionGCA_002844635.1

More information

General information about Pig can be found in Wikipedia.

Assembly Wheel

Assembly stats plots are described at github.com/rjchallis/assembly-stats
DOI

Assembly Badge:

351

X | Y | Z

  • 10x : N50 Contig (kb)
  • 10y : N50 Scaffold (kb)
  • Z = 1|0 : Assembled to Chromosomes level

eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level

Overall Assembly Statistics

Source: NCBI Assembly Report
Overall Statistics
Total Length2,755,438,182
Total Gap Length132,307,944
Spanned Gaps661
Unspanned Gaps0
Number of chromosomes and plasmids21
Scaffold
Scaffold Count14,157
N50131,458,098
N75
N90
L509
Contig
Contig Count14,818
N506,372,407

BUSCO statistics