Mouse (MGSCv3) Assembly Information
Assembly
The mouse mgsc gEVAL viewer represents the Mouse Genome Sequencing Consortium's MGSCv3 sequence assembly released around 2002.
The Mouse Sequencing Consortium (MSC) was formed by the National Institutes of Health, the Wellcome Trust, and three private companies (GlaxoSmithKline, Merck Genome Research Institute and Affymetrix, Inc.) to accelerate efforts to sequence the mouse genome. Washington University, the Whitehead Institute for Biomedical Research (now the Broad Institute), and the The Sanger Institute were sequencing centers for this project.
PGP Viewer Assembly Information:
Information regarding the assembly can be found here
Statistics of the original MGSCv3 assembly and the associated publication can be found here Mouse Sequencing Consortium et al. Nature 2002.
| General Information | |
|---|---|
| BioProject | PRJNA169 |
| BioSample | SAMEA3138312 |
| Submitter | Genome_Reference_Consortium |
| Date | 2002-5-15 |
| Assembly Type | haploid |
| Assembly Level | Chromosome |
| WGS Project | CAAA01 |
| Assembly Accession | |
More information
General information about Mouse can be found in Wikipedia.
Assembly Wheel
Assembly stats plots are described at github.com/rjchallis/assembly-stats
Assembly Badge:
| 1 | 4 | 1 |
X | Y | Z
- 10x : N50 Contig (kb)
- 10y : N50 Scaffold (kb)
- Z = 1|0 : Assembled to Chromosomes level
eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level
Overall Assembly Statistics
Source: NCBI Assembly Report| Overall Statistics | |
|---|---|
| Total Length | 2,684,542,854 |
| Total Gap Length | 209,475,129 |
| Spanned Gaps | 176,520 |
| Unspanned Gaps | 366 |
| Number of chromosomes and plasmids | 20 |
| Scaffold | |
| Scaffold Count | 42,620 |
| N50 | 17,794,526 |
| N75 | 10,171,877 |
| N90 | 4,199,232 |
| L50 | 41 |
| Contig | |
| Contig Count | 219,140 |
| N50 | 25,412 |