Human (NA12878) Assembly Information

Assembly

Homo sapiens

The HsapALLPATHS1 (GCA_000185165.1 assembly is an ALLPATHS assembly of Illumina reads from the NA12878 individual, released in 2011.

General Information
BioProjectPRJNA59877
BioSampleSAMN02981291
SubmitterBroad_Institute
Date2011-1-6
Sample Sexfemale
Assembly Typehaploid
Assembly LevelScaffold
WGS ProjectAEKP01
Assembly MethodALLPATHS-LG_v._34731
Genome Coverage103.1x
Sequencing TechIllumina_GAII;_Illumina_HiSeq
Assembly AccessionGCA_000185165.1

More information

General information about Human can be found in Wikipedia.

Assembly Wheel

Assembly stats plots are described at github.com/rjchallis/assembly-stats
DOI

Assembly Badge:

140

X | Y | Z

  • 10x : N50 Contig (kb)
  • 10y : N50 Scaffold (kb)
  • Z = 1|0 : Assembled to Chromosomes level

eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level

Overall Assembly Statistics

Source: NCBI Assembly Report
Overall Statistics
Total Length2,786,258,565
Total Gap Length171,353,127
Spanned Gaps219,801
Unspanned Gaps0
Number of chromosomes and plasmids0
Scaffold
Scaffold Count11,393
N5012,084,118
N755,299,129
N902,074,802
L5067
Contig
Contig Count231,194
N5023,924

Bionano Genome Map Statistics

Note: overall alignments are dependant on many factors including the state of the genome maps. This information is useful for comparative approaches

BUSCO statistics