Punchlist for: Transcript Organization (refseq)
| Transcript Name | Length | Top Location based on coverage | Location/coverage of hits | Extra |
|---|---|---|---|---|
| 1810009N02Rik (NM_026939.1) | 1663 | Chr:X Cov: 44.56% | ID: 94.2% | 811-1599 | + | Chr:12 Cov: 3.73% | ID: 93.55% | 845-906 | + | |
| Copg2os2 (NR_002845.1) | 2001 | Chr:6 Cov: 96.05% | ID: 99.9% | 73-2001 | + Cov: 3.9% | ID: 100% | 156-150 | + | ||
| Defa-rs10 (NM_007845.3) | 367 | Chr:8 Cov: 50.95% | ID: 90.37% | 3-189 | - Cov: 50.41% | ID: 92.43% | 3-187 | + | ||
| Defa-rs12 (NM_007846.1) | 278 | Chr:8 Cov: 60.79% | ID: 91.12% | 1-169 | - Cov: 60.07% | ID: 90.42% | 1-167 | + | ||
| Defa-rs2 (NM_007847.1) | 483 | Chr:8 Cov: 44.31% | ID: 90.65% | 1-214 | - Cov: 43.89% | ID: 91.04% | 1-212 | + | ||
| Eppk1 (NM_144848.2) | 21595 | Chr:15 Cov: 57.07% | ID: 99.99% | 1-21595 | - Cov: 23.65% | ID: 95.33% | 4032-19176 | - Cov: 23.56% | ID: 95.77% | 3199-16086 | - Cov: 23.19% | ID: 95.92% | 6087-17631 | - Cov: 21.85% | ID: 96.24% | 3440-14541 | - | ||
| F630003A18Rik (NM_177010.3) | 1933 | Chr:16 Cov: 91.93% | ID: 92.12% | 1-1821 | + Cov: 68.29% | ID: 91.89% | 276-1933 | + Cov: 52.87% | ID: 92.07% | 1-1115 | + Cov: 24.88% | ID: 93.35% | 500-1117 | + | ||
| Gm12191 (NR_028101.1) | 522 | Chr:11 Cov: 97.89% | ID: 100% | 1-511 | - | Chr:6 Cov: 92.72% | ID: 98.97% | 17-500 | + Chr:17 Cov: 92.34% | ID: 98.34% | 13-496 | + Chr:X Cov: 91.76% | ID: 98.54% | 18-496 | - Chr:15 Cov: 91.57% | ID: 99.58% | 6-483 | - | |
| Kcnip4 (NM_001199242.1) | 2362 | Chr:5 Cov: 88.87% | ID: 100% | 264-2362 | - Cov: 11.26% | ID: 100% | 1-266 | - | Chr:11 Cov: 1.27% | ID: 100% | 47-76 | - | |
| Kcnip4 (NM_001199243.1) | 2260 | Chr:5 Cov: 88.36% | ID: 100% | 264-2260 | - Cov: 11.68% | ID: 100% | 1-264 | - | Chr:11 Cov: 1.33% | ID: 100% | 47-76 | - | |
| Klra16 (NM_013794.4) | 1233 | Chr:6 Cov: 95.86% | ID: 92.72% | 1-1223 | - Cov: 94.08% | ID: 92.16% | 1-1229 | - Cov: 86.21% | ID: 93.7% | 77-1229 | - | ||
| LOC100045026 (NM_001039241.2) | 2775 | Chr:17 Cov: 97.51% | ID: 93.64% | 1-2775 | - Cov: 92.94% | ID: 92.17% | 1-2775 | - Cov: 85.3% | ID: 92.06% | 270-2775 | - Cov: 46.85% | ID: 93.23% | 1-1328 | - Cov: 45.44% | ID: 91.51% | 1417-2775 | - | ||
| Mrgpra7 (NM_207535.1) | 917 | Chr:7 Cov: 97.27% | ID: 91.48% | 1-917 | - Cov: 18.87% | ID: 91.33% | 745-917 | - Cov: 18.65% | ID: 92.98% | 40-210 | - | ||
| Muc19 (NM_207243.2) | 22794 | Chr:15 Cov: 82.84% | ID: 99.99% | 1-22794 | + Cov: 39.6% | ID: 99.88% | 3974-13000 | + Cov: 36.24% | ID: 99.99% | 12751-21500 | + Cov: 34.65% | ID: 99.86% | 3974-17250 | + Cov: 31.95% | ID: 100% | 8501-17250 | + | ||
| Muc6 (NM_181729.2) | 8552 | Chr:7 Cov: 95.5% | ID: 99.91% | 1-8552 | - Cov: 19.46% | ID: 96.21% | 4337-6358 | - Cov: 16.49% | ID: 93.48% | 5751-7369 | - Cov: 1.41% | ID: 93.39% | 7253-7373 | - Cov: 1.09% | ID: 93.55% | 4725-4817 | - | ||
| Mx1 (NM_010846.1) | 3218 | Chr:16 Cov: 86.7% | ID: 99.46% | 1-3218 | - Cov: 30.17% | ID: 95.16% | 216-1217 | + | Chr:4 Cov: 5.47% | ID: 92.61% | 2481-2684 | + Chr:10 Cov: 3.54% | ID: 91.23% | 3048-3161 | + Chr:18 Cov: 3.26% | ID: 92.38% | 2580-2685 | + | |
| Nutf2-ps1 (NR_033574.1) | 914 | Chr:19 Cov: 96.61% | ID: 100% | 1-883 | - | Chr:18 Cov: 95.73% | ID: 99.31% | 8-882 | - Chr:8 Cov: 95.73% | ID: 100% | 8-882 | + | |
| Olfr176 (NM_146993.1) | 955 | Chr:16 Cov: 97.17% | ID: 95.47% | 1-933 | - Cov: 95.71% | ID: 93.54% | 1-914 | - | Chr:2 Cov: 5.13% | ID: 97.96% | 343-391 | + Cov: 4.82% | ID: 91.3% | 352-397 | + | |
| Olfr255 (NM_001005780.1) | 939 | Chr:2 Cov: 7.88% | ID: 90.54% | 332-405 | + | Chr:7 Cov: 5.01% | ID: 91.49% | 826-872 | + Cov: 4.9% | ID: 91.3% | 346-391 | + Cov: 3.83% | ID: 94.44% | 345-380 | - | |
| Pik3c2g (NM_207683.2) | 6358 | Chr:6 Cov: 97.86% | ID: 99.5% | 13-6294 | + | Chr:19 Cov: 1.82% | ID: 92.24% | 5062-5186 | - Cov: 0.87% | ID: 94.55% | 5131-5186 | + Chr:15 Cov: 1.09% | ID: 91.3% | 5134-5202 | + Chr:8 Cov: 0.8% | ID: 90.2% | 5115-5165 | - | |
| Pou6f2 (NM_175006.2) | 2403 | Chr:13 Cov: 87.93% | ID: 100% | 291-2403 | - | Chr:18 Cov: 3.25% | ID: 98.72% | 2269-2363 | + Chr:19 Cov: 2.91% | ID: 90% | 651-720 | - Chr:17 Cov: 2.58% | ID: 95.16% | 1-63 | + Chr:2 Cov: 2.5% | ID: 98.33% | 1-61 | + | |
| Ppp2r3d (NM_001163415.1) | 4381 | Chr:9 Cov: 94.23% | ID: 99.95% | 1-4381 | - | Chr:10 Cov: 7.83% | ID: 90.96% | 3578-3937 | + Chr:5 Cov: 7.51% | ID: 93.62% | 3591-3937 | + Chr:4 Cov: 7.19% | ID: 94.29% | 3574-3937 | + Chr:15 Cov: 7.03% | ID: 94.16% | 3591-3935 | - | |
| Ppp2r3d (NM_011154.2) | 4147 | Chr:9 Cov: 93.9% | ID: 99.95% | 1-4147 | - | Chr:10 Cov: 8.27% | ID: 90.96% | 3344-3703 | + Chr:5 Cov: 7.93% | ID: 93.62% | 3357-3703 | + Chr:4 Cov: 7.6% | ID: 94.29% | 3340-3703 | + Chr:15 Cov: 7.43% | ID: 94.16% | 3357-3701 | - | |
| Ppp2r3d (NR_028110.2) | 4489 | Chr:9 Cov: 94.36% | ID: 99.95% | 1-4489 | - | Chr:10 Cov: 7.64% | ID: 90.96% | 3686-4045 | + Chr:5 Cov: 7.33% | ID: 93.62% | 3699-4045 | + Chr:4 Cov: 7.02% | ID: 94.29% | 3682-4045 | + Chr:15 Cov: 6.86% | ID: 94.16% | 3699-4043 | - | |
| Ppp2r3d (NR_102716.1) | 4638 | Chr:9 Cov: 94.55% | ID: 99.95% | 1-4638 | - | Chr:10 Cov: 7.4% | ID: 90.96% | 3835-4194 | + Chr:5 Cov: 7.09% | ID: 93.62% | 3848-4194 | + Chr:4 Cov: 6.79% | ID: 94.29% | 3831-4194 | + Chr:15 Cov: 6.64% | ID: 94.16% | 3848-4192 | - | |
| Rn28s1 (NR_003279.1) | 4730 | Chr:13 Cov: 13.28% | ID: 97.29% | 1149-4142 | - | Chr:12 Cov: 12.92% | ID: 96.73% | 1138-1748 | + Chr:MSCHRUN_CTG24 Cov: 12.71% | ID: 100% | 4130-4730 | + Chr:16 Cov: 11.82% | ID: 99.64% | 1140-1698 | - Chr:15 Cov: 11.61% | ID: 98% | 1193-1741 | + | |
| Rn45s (NR_046233.2) | 13399 | Chr:17 Cov: 43.32% | ID: 99.05% | 656-6505 | + | Chr:MSCHRUN_CTG24 Cov: 8.49% | ID: 99.47% | 12252-13399 | + Chr:6 Cov: 6.74% | ID: 98.67% | 4328-5230 | + Chr:13 Cov: 4.69% | ID: 97.29% | 9271-12264 | - Chr:12 Cov: 4.56% | ID: 96.73% | 9260-9870 | + | |
| Sh3gl3 (NM_001277954.1) | 1641 | Chr:7 Cov: 95.55% | ID: 100% | 1-1641 | + Cov: 8.17% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 75.62% | ID: 93.15% | 219-1640 | + Chr:11 Cov: 5.06% | ID: 91.57% | 5-87 | + Chr:1 Cov: 4.94% | ID: 92.59% | 5-85 | - | |
| Sh3gl3 (NM_001277955.1) | 1449 | Chr:7 Cov: 94.96% | ID: 100% | 1-1449 | + Cov: 9.25% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 72.53% | ID: 92.96% | 219-1448 | + Chr:11 Cov: 5.73% | ID: 91.57% | 5-87 | + Chr:1 Cov: 5.59% | ID: 92.59% | 5-85 | - | |
| Sh3gl3 (NM_017400.6) | 1648 | Chr:7 Cov: 95.57% | ID: 100% | 1-1648 | + Cov: 8.13% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 75.73% | ID: 93.19% | 219-1647 | + Chr:11 Cov: 5.04% | ID: 91.57% | 5-87 | + Chr:1 Cov: 4.92% | ID: 92.59% | 5-85 | - | |
| Snord88c (NR_028534.1) | 89 | Chr:7 Cov: 94.38% | ID: 100% | 6-89 | + | Chr:15 Cov: 59.55% | ID: 98.11% | 37-89 | - | |
| Sts (NM_009293.1) | 2283 | Chr:X Cov: 32.9% | ID: 99.69% | 1533-2283 | + Cov: 18.88% | ID: 99.77% | 1099-1529 | - Cov: 13.27% | ID: 100% | 252-554 | - Cov: 10.95% | ID: 99.6% | 4-253 | - Cov: 10.91% | ID: 100% | 597-845 | - | ||
| 1810009N02Rik (NM_026939.1) | 1663 | Chr:X Cov: 44.56% | ID: 94.2% | 811-1599 | + | Chr:12 Cov: 3.73% | ID: 93.55% | 845-906 | + | |
| Copg2os2 (NR_002845.1) | 2001 | Chr:6 Cov: 96.05% | ID: 99.9% | 73-2001 | + Cov: 3.9% | ID: 100% | 156-150 | + | ||
| Defa-rs10 (NM_007845.3) | 367 | Chr:8 Cov: 50.95% | ID: 90.37% | 3-189 | - Cov: 50.41% | ID: 92.43% | 3-187 | + | ||
| Defa-rs12 (NM_007846.1) | 278 | Chr:8 Cov: 60.79% | ID: 91.12% | 1-169 | - Cov: 60.07% | ID: 90.42% | 1-167 | + | ||
| Defa-rs2 (NM_007847.1) | 483 | Chr:8 Cov: 44.31% | ID: 90.65% | 1-214 | - Cov: 43.89% | ID: 91.04% | 1-212 | + | ||
| Eppk1 (NM_144848.2) | 21595 | Chr:15 Cov: 57.07% | ID: 99.99% | 1-21595 | - Cov: 23.65% | ID: 95.33% | 4032-19176 | - Cov: 23.56% | ID: 95.77% | 3199-16086 | - Cov: 23.19% | ID: 95.92% | 6087-17631 | - Cov: 21.85% | ID: 96.24% | 3440-14541 | - | ||
| F630003A18Rik (NM_177010.3) | 1933 | Chr:16 Cov: 91.93% | ID: 92.12% | 1-1821 | + Cov: 68.29% | ID: 91.89% | 276-1933 | + Cov: 52.87% | ID: 92.07% | 1-1115 | + Cov: 24.88% | ID: 93.35% | 500-1117 | + | ||
| Gm12191 (NR_028101.1) | 522 | Chr:11 Cov: 97.89% | ID: 100% | 1-511 | - | Chr:6 Cov: 92.72% | ID: 98.97% | 17-500 | + Chr:17 Cov: 92.34% | ID: 98.34% | 13-496 | + Chr:X Cov: 91.76% | ID: 98.54% | 18-496 | - Chr:15 Cov: 91.57% | ID: 99.58% | 6-483 | - | |
| Kcnip4 (NM_001199242.1) | 2362 | Chr:5 Cov: 88.87% | ID: 100% | 264-2362 | - Cov: 11.26% | ID: 100% | 1-266 | - | Chr:11 Cov: 1.27% | ID: 100% | 47-76 | - | |
| Kcnip4 (NM_001199243.1) | 2260 | Chr:5 Cov: 88.36% | ID: 100% | 264-2260 | - Cov: 11.68% | ID: 100% | 1-264 | - | Chr:11 Cov: 1.33% | ID: 100% | 47-76 | - | |
| Klra16 (NM_013794.4) | 1233 | Chr:6 Cov: 95.86% | ID: 92.72% | 1-1223 | - Cov: 94.08% | ID: 92.16% | 1-1229 | - Cov: 86.21% | ID: 93.7% | 77-1229 | - | ||
| LOC100045026 (NM_001039241.2) | 2775 | Chr:17 Cov: 97.51% | ID: 93.64% | 1-2775 | - Cov: 92.94% | ID: 92.17% | 1-2775 | - Cov: 85.3% | ID: 92.06% | 270-2775 | - Cov: 46.85% | ID: 93.23% | 1-1328 | - Cov: 45.44% | ID: 91.51% | 1417-2775 | - | ||
| Mrgpra7 (NM_207535.1) | 917 | Chr:7 Cov: 97.27% | ID: 91.48% | 1-917 | - Cov: 18.87% | ID: 91.33% | 745-917 | - Cov: 18.65% | ID: 92.98% | 40-210 | - | ||
| Muc19 (NM_207243.2) | 22794 | Chr:15 Cov: 82.84% | ID: 99.99% | 1-22794 | + Cov: 39.6% | ID: 99.88% | 3974-13000 | + Cov: 36.24% | ID: 99.99% | 12751-21500 | + Cov: 34.65% | ID: 99.86% | 3974-17250 | + Cov: 31.95% | ID: 100% | 8501-17250 | + | ||
| Muc6 (NM_181729.2) | 8552 | Chr:7 Cov: 95.5% | ID: 99.91% | 1-8552 | - Cov: 19.46% | ID: 96.21% | 4337-6358 | - Cov: 16.49% | ID: 93.48% | 5751-7369 | - Cov: 1.41% | ID: 93.39% | 7253-7373 | - Cov: 1.09% | ID: 93.55% | 4725-4817 | - | ||
| Mx1 (NM_010846.1) | 3218 | Chr:16 Cov: 86.7% | ID: 99.46% | 1-3218 | - Cov: 30.17% | ID: 95.16% | 216-1217 | + | Chr:4 Cov: 5.47% | ID: 92.61% | 2481-2684 | + Chr:10 Cov: 3.54% | ID: 91.23% | 3048-3161 | + Chr:18 Cov: 3.26% | ID: 92.38% | 2580-2685 | + | |
| Nutf2-ps1 (NR_033574.1) | 914 | Chr:19 Cov: 96.61% | ID: 100% | 1-883 | - | Chr:18 Cov: 95.73% | ID: 99.31% | 8-882 | - Chr:8 Cov: 95.73% | ID: 100% | 8-882 | + | |
| Olfr176 (NM_146993.1) | 955 | Chr:16 Cov: 97.17% | ID: 95.47% | 1-933 | - Cov: 95.71% | ID: 93.54% | 1-914 | - | Chr:2 Cov: 5.13% | ID: 97.96% | 343-391 | + Cov: 4.82% | ID: 91.3% | 352-397 | + | |
| Olfr255 (NM_001005780.1) | 939 | Chr:2 Cov: 7.88% | ID: 90.54% | 332-405 | + | Chr:7 Cov: 5.01% | ID: 91.49% | 826-872 | + Cov: 4.9% | ID: 91.3% | 346-391 | + Cov: 3.83% | ID: 94.44% | 345-380 | - | |
| Pik3c2g (NM_207683.2) | 6358 | Chr:6 Cov: 97.86% | ID: 99.5% | 13-6294 | + | Chr:19 Cov: 1.82% | ID: 92.24% | 5062-5186 | - Cov: 0.87% | ID: 94.55% | 5131-5186 | + Chr:15 Cov: 1.09% | ID: 91.3% | 5134-5202 | + Chr:8 Cov: 0.8% | ID: 90.2% | 5115-5165 | - | |
| Pou6f2 (NM_175006.2) | 2403 | Chr:13 Cov: 87.93% | ID: 100% | 291-2403 | - | Chr:18 Cov: 3.25% | ID: 98.72% | 2269-2363 | + Chr:19 Cov: 2.91% | ID: 90% | 651-720 | - Chr:17 Cov: 2.58% | ID: 95.16% | 1-63 | + Chr:2 Cov: 2.5% | ID: 98.33% | 1-61 | + | |
| Ppp2r3d (NM_001163415.1) | 4381 | Chr:9 Cov: 94.23% | ID: 99.95% | 1-4381 | - | Chr:10 Cov: 7.83% | ID: 90.96% | 3578-3937 | + Chr:5 Cov: 7.51% | ID: 93.62% | 3591-3937 | + Chr:4 Cov: 7.19% | ID: 94.29% | 3574-3937 | + Chr:15 Cov: 7.03% | ID: 94.16% | 3591-3935 | - | |
| Ppp2r3d (NM_011154.2) | 4147 | Chr:9 Cov: 93.9% | ID: 99.95% | 1-4147 | - | Chr:10 Cov: 8.27% | ID: 90.96% | 3344-3703 | + Chr:5 Cov: 7.93% | ID: 93.62% | 3357-3703 | + Chr:4 Cov: 7.6% | ID: 94.29% | 3340-3703 | + Chr:15 Cov: 7.43% | ID: 94.16% | 3357-3701 | - | |
| Ppp2r3d (NR_028110.2) | 4489 | Chr:9 Cov: 94.36% | ID: 99.95% | 1-4489 | - | Chr:10 Cov: 7.64% | ID: 90.96% | 3686-4045 | + Chr:5 Cov: 7.33% | ID: 93.62% | 3699-4045 | + Chr:4 Cov: 7.02% | ID: 94.29% | 3682-4045 | + Chr:15 Cov: 6.86% | ID: 94.16% | 3699-4043 | - | |
| Ppp2r3d (NR_102716.1) | 4638 | Chr:9 Cov: 94.55% | ID: 99.95% | 1-4638 | - | Chr:10 Cov: 7.4% | ID: 90.96% | 3835-4194 | + Chr:5 Cov: 7.09% | ID: 93.62% | 3848-4194 | + Chr:4 Cov: 6.79% | ID: 94.29% | 3831-4194 | + Chr:15 Cov: 6.64% | ID: 94.16% | 3848-4192 | - | |
| Rn28s1 (NR_003279.1) | 4730 | Chr:13 Cov: 13.28% | ID: 97.29% | 1149-4142 | - | Chr:12 Cov: 12.92% | ID: 96.73% | 1138-1748 | + Chr:MSCHRUN_CTG24 Cov: 12.71% | ID: 100% | 4130-4730 | + Chr:16 Cov: 11.82% | ID: 99.64% | 1140-1698 | - Chr:15 Cov: 11.61% | ID: 98% | 1193-1741 | + | |
| Rn45s (NR_046233.2) | 13399 | Chr:17 Cov: 43.32% | ID: 99.05% | 656-6505 | + | Chr:MSCHRUN_CTG24 Cov: 8.49% | ID: 99.47% | 12252-13399 | + Chr:6 Cov: 6.74% | ID: 98.67% | 4328-5230 | + Chr:13 Cov: 4.69% | ID: 97.29% | 9271-12264 | - Chr:12 Cov: 4.56% | ID: 96.73% | 9260-9870 | + | |
| Sh3gl3 (NM_001277954.1) | 1641 | Chr:7 Cov: 95.55% | ID: 100% | 1-1641 | + Cov: 8.17% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 75.62% | ID: 93.15% | 219-1640 | + Chr:11 Cov: 5.06% | ID: 91.57% | 5-87 | + Chr:1 Cov: 4.94% | ID: 92.59% | 5-85 | - | |
| Sh3gl3 (NM_001277955.1) | 1449 | Chr:7 Cov: 94.96% | ID: 100% | 1-1449 | + Cov: 9.25% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 72.53% | ID: 92.96% | 219-1448 | + Chr:11 Cov: 5.73% | ID: 91.57% | 5-87 | + Chr:1 Cov: 5.59% | ID: 92.59% | 5-85 | - | |
| Sh3gl3 (NM_017400.6) | 1648 | Chr:7 Cov: 95.57% | ID: 100% | 1-1648 | + Cov: 8.13% | ID: 96.27% | 5-224 | + | Chr:2 Cov: 75.73% | ID: 93.19% | 219-1647 | + Chr:11 Cov: 5.04% | ID: 91.57% | 5-87 | + Chr:1 Cov: 4.92% | ID: 92.59% | 5-85 | - | |
| Snord88c (NR_028534.1) | 89 | Chr:7 Cov: 94.38% | ID: 100% | 6-89 | + | Chr:15 Cov: 59.55% | ID: 98.11% | 37-89 | - | |
| Sts (NM_009293.1) | 2283 | Chr:X Cov: 32.9% | ID: 99.69% | 1533-2283 | + Cov: 18.88% | ID: 99.77% | 1099-1529 | - Cov: 13.27% | ID: 100% | 252-554 | - Cov: 10.95% | ID: 99.6% | 4-253 | - Cov: 10.91% | ID: 100% | 597-845 | - |