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Overview

Punchlist for: Transcript Organization (gencode)

Transcript NameLengthTop Location based on coverageLocation/coverage of hitsExtra
Cadm2
(ENSMUST00000123266)		422Chr:16
Cov: 76.54% | ID: 100% | 1-323 | -
Cov: 23.93% | ID: 100% | 322-422 | -
Cul4a
(ENSMUST00000142700)		357Chr:8
Cov: 97.2% | ID: 100% | 11-357 | +		Chr:17
Cov: 95.24% | ID: 95% | 1-354 | +
Fgfr2
(ENSMUST00000124096)		2425Chr:7
Cov: 87.09% | ID: 100% | 314-2425 | -
Cov: 12.95% | ID: 100% | 1-314 | -
G530012D18Rik
(ENSMUST00000178024)		420Chr:1
Cov: 94.76% | ID: 96.23% | 2-420 | -
Cov: 93.33% | ID: 100% | 29-420 | +
Glul
(ENSMUST00000140685)		379Chr:1
Cov: 97.89% | ID: 100% | 1-371 | +		Chr:18
Cov: 92.35% | ID: 96% | 30-379 | -
Chr:11
Cov: 90.24% | ID: 97.66% | 30-379 | +
Gm10177
(ENSMUST00000160052)		444Chr:9
Cov: 94.82% | ID: 100% | 1-421 | +		Chr:11
Cov: 94.59% | ID: 100% | 1-420 | -
Chr:X
Cov: 94.14% | ID: 97.85% | 2-421 | +
Chr:1
Cov: 93.47% | ID: 97.83% | 2-418 | -
Gm10491
(ENSMUST00000085330)		117Chr:11
Cov: 95.73% | ID: 98.21% | 6-117 | +		Chr:17
Cov: 94.87% | ID: 98.2% | 7-117 | -
Cov: 94.02% | ID: 99.09% | 8-117 | -
Chr:18
Cov: 94.87% | ID: 99.1% | 7-117 | -
Chr:19
Cov: 94.87% | ID: 98.2% | 7-117 | +
Gm10985
(ENSMUST00000108014)		81Chr:18
Cov: 92.59% | ID: 100% | 7-81 | -		Chr:2
Cov: 92.59% | ID: 100% | 7-81 | +
Chr:3
Cov: 92.59% | ID: 100% | 7-81 | +
Chr:4
Cov: 92.59% | ID: 97.33% | 7-81 | -
Chr:Y
Cov: 91.36% | ID: 100% | 8-81 | +
Gm17387
(ENSMUST00000170892)		72Chr:7
Cov: 90.28% | ID: 100% | 8-72 | +
Cov: 83.33% | ID: 98.33% | 8-70 | +		Chr:18
Cov: 84.72% | ID: 93.44% | 8-69 | -
Chr:16
Cov: 83.33% | ID: 100% | 9-70 | -
Chr:12
Cov: 79.17% | ID: 100% | 8-65 | +
Gm17545
(ENSMUST00000168332)		72Chr:16
Cov: 52.78% | ID: 100% | 3-42 | +		Chr:Y
Cov: 52.78% | ID: 100% | 5-42 | +
Gm17604
(ENSMUST00000114890)		75Chr:1
Cov: 78.67% | ID: 100% | 14-72 | +		Chr:18
Cov: 76% | ID: 92.98% | 13-69 | +
Cov: 74.67% | ID: 98.21% | 13-68 | -
Chr:17
Cov: 74.67% | ID: 98.21% | 13-68 | -
Cov: 70.67% | ID: 100% | 15-67 | -
Gm20388
(ENSMUST00000127664)		3953Chr:8
Cov: 97.57% | ID: 100% | 97-3953 | +
Cov: 2.53% | ID: 100% | 1-100 | +		Chr:X
Cov: 1.29% | ID: 90.2% | 2091-2141 | +
Chr:5
Cov: 1.26% | ID: 90% | 2094-2143 | -
Chr:12
Cov: 1.01% | ID: 95% | 2108-2148 | -
Gm37013
(ENSMUST00000194544)		313Chr:18
Cov: 70.93% | ID: 100% | 1-222 | +
Cov: 29.07% | ID: 100% | 223-313 | +
Gm37388
(ENSMUST00000193984)		429Chr:18
Cov: 78.79% | ID: 100% | 1-338 | +
Cov: 64.34% | ID: 96.01% | 59-334 | +
Cov: 59.67% | ID: 93.75% | 60-315 | +
Cov: 21.21% | ID: 100% | 339-429 | +
Cov: 20.75% | ID: 92.13% | 63-151 | +
Gm45733
(ENSMUST00000212988)		437Chr:8
Cov: 94.74% | ID: 100% | 1-414 | -		Chr:10
Cov: 93.59% | ID: 99.76% | 1-410 | +
Gm47412
(ENSMUST00000222880)		309Chr:13
Cov: 97.09% | ID: 100% | 1-300 | -
Cov: 96.76% | ID: 98.66% | 1-300 | -
Gm48468
(ENSMUST00000215976)		94Chr:11
Cov: 97.87% | ID: 100% | 1-92 | -
Cov: 96.81% | ID: 96.7% | 1-91 | -
Gm48469
(ENSMUST00000214610)		94Chr:11
Cov: 97.87% | ID: 100% | 1-92 | -
Cov: 96.81% | ID: 96.7% | 1-91 | -
Gm48477
(ENSMUST00000217640)		94Chr:11
Cov: 97.87% | ID: 100% | 1-92 | -
Cov: 96.81% | ID: 96.7% | 1-91 | -
Gm48490
(ENSMUST00000213855)		94Chr:11
Cov: 97.87% | ID: 100% | 1-92 | -
Cov: 96.81% | ID: 96.7% | 1-91 | -
Gm48490
(ENSMUST00000229811)		94Chr:11
Cov: 97.87% | ID: 100% | 1-92 | -
Cov: 96.81% | ID: 96.7% | 1-91 | -
Gm48490
(ENSMUST00000230230)		94Chr:11
Cov: 97.87% | ID: 98.91% | 1-92 | -
Cov: 96.81% | ID: 95.6% | 1-91 | -
Gm48490
(ENSMUST00000231023)		94Chr:11
Cov: 97.87% | ID: 98.91% | 1-92 | -
Cov: 96.81% | ID: 95.6% | 1-91 | -
Gm49207
(ENSMUST00000228223)		279Chr:15
Cov: 96.42% | ID: 100% | 1-269 | +		Chr:12
Cov: 96.06% | ID: 99.63% | 1-268 | +
Gm6169
(ENSMUST00000071118)		1030Chr:13
Cov: 97.57% | ID: 100% | 1-1005 | -		Chr:X
Cov: 97.28% | ID: 99.5% | 1-1002 | -
Chr:2
Cov: 97.18% | ID: 98.9% | 1-1003 | +
Gm7324
(ENSMUST00000094051)		1647Chr:14
Cov: 98% | ID: 100% | 1-1614 | +		Chr:8
Cov: 97.87% | ID: 99.63% | 3-1614 | -
Gm904
(ENSMUST00000191999)		309Chr:13
Cov: 97.09% | ID: 99% | 1-300 | -
Cov: 96.76% | ID: 99% | 1-300 | +
Gm9774
(ENSMUST00000192538)		1392Chr:3
Cov: 97.7% | ID: 100% | 1-1360 | -		Chr:2
Cov: 97.56% | ID: 99.78% | 1-1358 | +
Gm9803
(ENSMUST00000057649)		563Chr:10
Cov: 95.2% | ID: 100% | 1-536 | +		Chr:16
Cov: 94.85% | ID: 100% | 1-534 | -
Gm9803
(ENSMUST00000216543)		456Chr:10
Cov: 94.3% | ID: 100% | 1-430 | +		Chr:16
Cov: 93.86% | ID: 99.77% | 1-428 | -
Gm9844
(ENSMUST00000170837)		485Chr:3
Cov: 96.29% | ID: 98.29% | 1-467 | -		Chr:7
Cov: 96.29% | ID: 100% | 1-467 | +
Chr:6
Cov: 96.08% | ID: 99.14% | 1-466 | -
Gpx4-ps2
(ENSMUST00000217344)		782Chr:10
Cov: 97.7% | ID: 100% | 1-764 | +
Cov: 97.44% | ID: 99.74% | 1-762 | +
Kcnip4
(ENSMUST00000087395)		2366Chr:5
Cov: 88.76% | ID: 100% | 267-2366 | -
Cov: 11.37% | ID: 100% | 1-269 | -		Chr:11
Cov: 1.27% | ID: 100% | 50-79 | -
Kcnip4
(ENSMUST00000176191)		2116Chr:5
Cov: 94.19% | ID: 100% | 124-2116 | -
Cov: 5.86% | ID: 100% | 1-124 | -
LT629153.2
(ENSMUST00000229558)		825Chr:11
Cov: 83.88% | ID: 93.79% | 134-825 | -
Cov: 66.3% | ID: 91.04% | 279-825 | -
LT629153.2
(ENSMUST00000230813)		825Chr:11
Cov: 83.88% | ID: 93.79% | 134-825 | -
Cov: 66.3% | ID: 91.04% | 279-825 | -
Lsamp
(ENSMUST00000189358)		2766Chr:16
Cov: 87.71% | ID: 100% | 341-2766 | +
Cov: 12.47% | ID: 100% | 1-345 | +		Chr:19
Cov: 1.81% | ID: 92% | 595-644 | +
Chr:13
Cov: 1.27% | ID: 94.29% | 600-634 | -
Chr:7
Cov: 1.27% | ID: 94.29% | 1224-1258 | -
Mrpl23-ps1
(ENSMUST00000173086)		580Chr:2
Cov: 93.62% | ID: 100% | 1-543 | -		Chr:7
Cov: 92.93% | ID: 100% | 2-540 | +
Rcor3
(ENSMUST00000193144)		345Chr:1
Cov: 71.88% | ID: 100% | 98-345 | -
Cov: 50.72% | ID: 100% | 171-345 | -
Rcor3
(ENSMUST00000217133)		345Chr:1
Cov: 71.88% | ID: 100% | 98-345 | -
Cov: 50.72% | ID: 100% | 171-345 | -
Rpl10-ps3
(ENSMUST00000076364)		768Chr:9
Cov: 97.27% | ID: 100% | 1-747 | -		Chr:15
Cov: 96.35% | ID: 99.19% | 1-741 | +
Chr:8
Cov: 96.35% | ID: 99.32% | 1-741 | +
Chr:X
Cov: 95.96% | ID: 100% | 4-740 | +
Chr:2
Cov: 95.57% | ID: 99.86% | 1-735 | -
Rpl36-ps12
(ENSMUST00000025040)		390Chr:6
Cov: 97.95% | ID: 100% | 1-382 | -		Chr:12
Cov: 97.18% | ID: 98.15% | 1-379 | +
Chr:17
Cov: 97.18% | ID: 96.83% | 1-379 | +
Cov: 96.92% | ID: 99.21% | 1-378 | +
Chr:2
Cov: 97.18% | ID: 97.89% | 1-379 | +
Rps2-ps10
(ENSMUST00000170335)		965Chr:18
Cov: 97.41% | ID: 100% | 1-940 | -		Chr:5
Cov: 96.89% | ID: 99.04% | 1-935 | -
Chr:13
Cov: 96.79% | ID: 99.36% | 1-935 | +
Chr:17
Cov: 96.79% | ID: 99.14% | 1-934 | -
Chr:X
Cov: 96.79% | ID: 99.79% | 1-934 | +
Rps26-ps1
(ENSMUST00000077208)		449Chr:8
Cov: 96.88% | ID: 100% | 1-435 | -		Chr:12
Cov: 95.99% | ID: 97.91% | 1-431 | +
Chr:6
Cov: 95.99% | ID: 98.38% | 1-431 | -
Chr:10
Cov: 95.77% | ID: 99.07% | 1-430 | -
Rps27rt
(ENSMUST00000053150)		374Chr:9
Cov: 92.78% | ID: 100% | 1-347 | -		Chr:3
Cov: 92.25% | ID: 100% | 1-345 | -
Cov: 91.71% | ID: 96.21% | 1-344 | -
Chr:6
Cov: 91.44% | ID: 96.49% | 1-345 | -
Chr:15
Cov: 91.18% | ID: 99.41% | 1-341 | -
Sacs
(ENSMUST00000229692)		42Chr:14
Cov: 71.43% | ID: 100% | 6-35 | +		Chr:Y
Cov: 71.43% | ID: 100% | 6-35 | +
Set
(ENSMUST00000147590)		844Chr:2
Cov: 97.99% | ID: 100% | 1-827 | +		Chr:5
Cov: 95.97% | ID: 98.52% | 14-827 | -
mt-Nd2
(ENSMUST00000082396)		1038Chr:2
Cov: 49.23% | ID: 96.67% | 528-1038 | -		Chr:5
Cov: 9.83% | ID: 97.06% | 937-1038 | +
Chr:1
Cov: 8.38% | ID: 93.1% | 184-270 | -
mt-Nd4
(ENSMUST00000082414)		1378Chr:1
Cov: 63.57% | ID: 100% | 1-876 | -		Chr:14
Cov: 2.54% | ID: 94.29% | 1069-1103 | -
Chr:2
Cov: 2.25% | ID: 100% | 1348-1378 | -
Chr:8
Cov: 2.18% | ID: 100% | 1147-1176 | -
mt-Nd5
(ENSMUST00000082418)		1824Chr:4
Cov: 59.1% | ID: 92.49% | 747-1824 | +		Chr:13
Cov: 52.3% | ID: 95.28% | 705-1659 | -
Chr:10
Cov: 3.18% | ID: 91.38% | 1005-1062 | -