Human (KOREF1) Assembly Information

Assembly

Homo sapiens

KOREF1 (GCA_001712695.1) is a hybrid assembly produced as part of the Korean Reference Genome Project.

This assembly was created using varying insert size libraries sequenced using Illumina HiSeq, with PacBio and Bionano and Opgen genome mapping for scaffolding. For datasets please visit the KOREF Project download page.

For more information please see publication Nature Communications 7, Article number: 13637 (2016)

General Information
BioProjectPRJNA294231
BioSampleSAMN04018081
SubmitterGenome_Research_Foundation
Date2016-9-20
Sample Sexmale
Assembly Typehaploid
Assembly LevelChromosome
WGS ProjectLWKW01
Assembly MethodSOAPdenovo_v._r240;_PBSuite_v._14.9.9
Genome Coverage154.7x
Sequencing TechIllumina_HiSeq;_PacBio
Assembly AccessionGCA_001712695.1

More information

General information about Human can be found in Wikipedia.

Assembly Wheel

Assembly stats plots are described at github.com/rjchallis/assembly-stats
DOI

Assembly Badge:

141

X | Y | Z

  • 10x : N50 Contig (kb)
  • 10y : N50 Scaffold (kb)
  • Z = 1|0 : Assembled to Chromosomes level

eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level

Overall Assembly Statistics

Source: NCBI Assembly Report
Overall Statistics
Total Length2,944,055,311
Total Gap Length31,856,046
Spanned Gaps123,782
Unspanned Gaps4,434
Number of chromosomes and plasmids24
Scaffold
Scaffold Count68,204
N5025,272,253
N7511,741,272
N903,530,333
L5037
Contig
Contig Count191,986
N5047,865

Bionano Genome Map Statistics

Note: overall alignments are dependant on many factors including the state of the genome maps. This information is useful for comparative approaches

BUSCO statistics