Human (HX1_1_1) Assembly Information
Assembly
The HX1_1.1 (GCA_001708065.2) assembly is a Pacbio sequenced, Bionano scaffolded, Falcon assembled assembly from a chinese individual (HuaXia1-HX1) from the Wang Lab at the University of Southern California.
Raw datasets, assemblies and further analyses can be found here.
For more information please refer to the publication Nature Communications 7, Article number: 12065 (2016).
| General Information | |
|---|---|
| BioProject | PRJNA301527 |
| BioSample | SAMN04251426 |
| Submitter | University_of_Southern_California |
| Date | 2016-10-21 |
| Sample Sex | male |
| Assembly Type | haploid |
| Assembly Level | Scaffold |
| WGS Project | LYOV02 |
| Assembly Method | Falcon_v._July-2015 |
| Genome Coverage | 103.0x |
| Sequencing Tech | PacBio;_BioNano |
| Assembly Accession | GCA_001708065.2 |
More information
General information about Human can be found in Wikipedia.
Assembly Wheel
Assembly stats plots are described at github.com/rjchallis/assembly-stats
Assembly Badge:
| 3 | 4 | 0 |
X | Y | Z
- 10x : N50 Contig (kb)
- 10y : N50 Scaffold (kb)
- Z = 1|0 : Assembled to Chromosomes level
eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level
Overall Assembly Statistics
Source: NCBI Assembly Report| Overall Statistics | |
|---|---|
| Total Length | 2,934,082,568 |
| Total Gap Length | 39,341,374 |
| Spanned Gaps | 3,916 |
| Unspanned Gaps | 0 |
| Number of chromosomes and plasmids | 0 |
| Scaffold | |
| Scaffold Count | 5,323 |
| N50 | 21,979,250 |
| N75 | |
| N90 | |
| L50 | 38 |
| Contig | |
| Contig Count | 9,239 |
| N50 | 8,325,012 |