| Punch Type | Description | no of entries |
|---|---|---|
| Gap Spanners (all) | Paired read gap spanners | 9119 |
| Gap Spanners (scaf/fpc) | Paired read gap spanners between scaffolds/fpc ctgs | 1452 |
| Incomplete Transcripts | Incomplete coverage of transcript mappings | 707 |
| Genome Builder Chain Results | Genome Builder chaining results | 65 |
| Genome Builder Join Results | Genome Builder component joining results | 421 |
| Transcript Orphans | Near perfect transcript mappings not mapped on primary components | 2087 |
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