Chicken (Galgal4) Assembly Information

Assembly

Chicken

The Gallus_gallus-4.0 assembly of the chicken genome was produced in November 2011 by the International Chicken Genome Consortium. It consists of 31 chromosomes, 2 linkage groups and 14,093 unplaced scaffolds.

The genome assembly represented here corresponds to GenBank Assembly ID GCA_000002315.2.

The genome assembly represented here corresponds to GenBank Assembly ID GCA_000002315.2

More information

General information about Chicken can be found in Wikipedia.

Assembly Wheel

Assembly stats plots are described at github.com/rjchallis/assembly-stats
DOI

Assembly Badge:

241

X | Y | Z

  • 10x : N50 Contig (kb)
  • 10y : N50 Scaffold (kb)
  • Z = 1|0 : Assembled to Chromosomes level

eg. 3 | 4 | 1 => 1Mb+ Contig, 10Mb+ Scaffold, Chromosome level

Overall Assembly Statistics

TOPLEVEL
Total Length1,046,932,099
Longest Component195,276,750
N5090,216,835
N50 Count4
Component>1kb14,828
Component Count15,932
SCAFFOLD
Total Length1,046,291,699
Longest Component44,546,952
N5012,877,381
N50 Count23
Component>1kb15,387
Component Count16,847
CONTIG
Total Length1,072,544,086
Longest Component1,808,339
N50225,536
N50 Count1,375
Component>1kb25,741
Component Count27,771