Zebrafish (Zv9)
Danio_rerio - Genome Reference Consortium
GCA_000002035.2
The zebrafish genome project is a collaboration between the Sanger Institute and the zebrafish community, announced during the Sanger Institute Zebrafish Workshop 2000 and was started in February 2001.
The zebrafish AGP viewer is taken from the Zv9 assembly (GCA_000002035.2) path built by the Genome Reference Informatics Team here at the Sanger Institute. The assembly was released April 1, 2010 and is based on roughly 90% clone sequence with gaps covered using sequence from the whole genome shotgun WGS31 assembly. For more information regarding the zebrafish sequencing work, visit the Sanger FAQ here
The Genome Reference Consortium (GRC) maintains and improves the assembly.
A live status of the current tiling path can be found using the webtool Chromoview.
Manual annotation of this genome can be found in
Vega
View karyotype
Example regionGenome assembly: CURRENT (GCA_000002035.2)
More information and statistics (N50, Coverage, BUSCO)
Retrieve a live status of the current tiling path using the tool Chromoview
Display your data in gEVAL
Punchlist OverviewPunchlists
The Zebrafish Punchlists are automated lists created to facilitate identification of and navigation to common issues or regions of interest.
Examples include:
- Gap Locations
- Overlap Issues
- Clone Spanning Locations
If you would like to recommend a punchlist to be added to a specific organism or in general please contact us
The Genome Reference Consortium
The Zebrafish gEVAL is maintained and improved by the Genome Reference Consortium (GRC)
Jira Ticketing System: Jira is the ticketing tracking system used by the GRC for genome issues. This can be a gap, path, variation, gene or other issues submitted by external users
Comparative genomics
gEVAL provides intra-species alignments. This is available for intermediate builds, major reference releases, and WGS/NGS assemblies.